3rd EMBO Workshop on Computational
and Structural Biology
Serock, Poland, 3-5 March 2017
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To download the agenda in .pdf click here.
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Agenda (tentative)
To download the agenda in .pdf click here.
Friday, 3rd of March | ||
| 10:00 | Bus from Warsaw (CeNT) to Serock (Nicola Conference Center) | |
| 11:30 – 11:35 | Opening Speech | |
| 11:35 – 12:20 | Eric Rawdon | Introduction to the study of entanglement in nature |
| 12:20 – 12:40 | Paweł Dąbrowski-Tumański | Two pathways of proteins with Gordian (52) knot folding |
| 12:40 – 13:00 | Wanda Niemyska | Gauss Linking Number reveals new nooks in entangled proteins! |
| 13:00 – 14:00 | Lunch | |
| 14:00 – 14:45 | Adam Kubas | Theoretical approaches for understanding gas-processing metalloenzymes: the case of [FeFe]-hydrogenases |
| 14:45 – 15:05 | Agata Perlińska | Role of the magnesium in a knotted methyltransferase |
| 15:05 – 15:25 | Vasilina Zayats | Modeling of yeast ion translocation protein Trk1 using combined theoretical and experimental approaches |
| 15:25 – 15:45 | Aleksandra Jarmolińska | Would evolution stop membrane proteins from knotting? |
| 15:45 – 16:0 | Coffee break | |
| 16:00 – 16:45 | Maria Górna | How do IFITs fit together in defense against viruses? |
| 16:45 – 17:05 | Matthew Merski | The RAP domain: structure, function, evolution and bioinformatics |
| 17:05 – 17:25 | Marcin Ziemniak | Structural basis of mRNA-cap recognition by Dcp1/Dcp2 complex |
| 17:25 – 17:55 | Gregor Weiss | The influence of hydrophobicity on kinetics of ligand-receptor association |
| 17:55 -18:10 | Coffee break | |
| 18:10 – 18:30 | Gaja Klaudel | Generic trace in proteins |
| 18:30 – 18:50 | Aleksandra Gierut | PyLasso - plugin to detect and analyze lasso type of entanglement in (bio) polymers |
| 18:50 – 19:10 | Józef Przytycki | Topologist reflects on pseudoknots |
| 19:20 – 20:20 | Dinner | |
Saturday, 4th of March | ||
| 08:00 – 08:55 | Breakfast | |
| 09:00 – 09:45 | Sebastian Glatt | Lost in translation – revisiting the tRNA wobble base |
| 09:45 – 10:05 | Monika Gaik | Uncovering molecular mechanisms of translational control with structural biology |
| 10:05 – 10:25 | Marta Smejda | The role of regulatory proteins in tRNA modifications in human cells |
| 10:25 – 10:45 | Anna Salerno-Kochan | Structural insights into the role of RNA-binding proteins in stem cell maintenance and differentiation |
| 10:45 – 11:05 | Karol Zakrzewski | Structural insights into the role of binding regulatory factors to Elongator subunit in the context of tRNA modification process |
| 11:05 – 11:20 | Coffee break | |
| 11:20 – 12:05 | Bartosz Trzaskowski | Computer-aided drug design, a tale of two succesfull (?) stories |
| 12:05 – 12:25 | Joanna Macnar | The influence of the QM- calculated ligands’ charge distribution on the docking results |
| 12:25 – 12:45 | Rafał Jakubowski | Toward a better life: in silico study of transthyretin related amyloidosis |
| 12:45 – 13:05 | Jan Kutner | Structure and function studies of RNA-binding with FAST motifs and a RAP domain |
| 13:10 – 14:10 | Lunch | |
| 14:30 – 19:00 | Paintball | |
| 19:30 | Dinner | |
Sunday, 5th of March | ||
| 08:30 – 09:45 | Breakfast | |
| 10:00 | Bus from Serock (Nicola Conference Center) to Warsaw CeNT | |
Important details:
- Dates:
- March 3-5, 2017
- Location:
- Nicola Conference Center
- Organizers:
-
Aleksandra Gierut (CENT, UW)
Aleksandra Jarmolińska (CENT, UW)
Gaja Klaudel (CENT, UW)
Piotr Setny (CENT, UW)
Joanna Sułkowska (CENT, UW)
Marta Wiśniewska (CENT, UW)
Funding
|
European Molecular Biology Organization |
|
Center for New Technologies University of Warsaw |